PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010103388.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 173aa    MW: 19343.8 Da    PI: 9.9335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010103388.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000184567123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC+ C ++F ++  L  H++ H
  XP_010103388.1 45 FKCQFCRRVFANSQALGGHQNAH 67
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-64172No hitNo description
Gene3DG3DSA:3.30.160.601.1E-44171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5524572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSDHRNPSSS LKLFGFPITE NGEVVVPSTE QRAERTSWEM ENRKFKCQFC RRVFANSQAL  60
GGHQNAHKRE RQRVSAQFQG RPVVGPVLSP HAVRSSAATS IYASRFAANY CNSNGIINGN  120
YNNPSSQEVL PTYRTFPSQY YNCLVSRPVL LQQELATKPE VGVDLHLKLS LSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103388.11e-127Zinc finger protein 6
TrEMBLW9RTV71e-127W9RTV7_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.16e-12C2H2 family protein